About Soham
Experienced bioinformatician with 5+ years of experience in the field of neurosciences, genomics, transcriptomics, and proteomics. Ph.D. specialized in large-scale data analysis and visualization. I have experience in designing analytical pipelines and I have collaborated across multiple disciplines, most notably bacterial genomics analysis in stress and aging models, and next-gen sequencing data. I have designed gene and bacterial networks for specific conditions. In addition, I have worked on real-life data involving psychiatric disorder (bipolar disorder), designing the major conceptual pipeline diagnosing patients.
English
Native or bilingual
Can work on-site
Paris (up to 50km)
Experience
- Ipsen Pharma
On Malt
Genomics and Computational Biology ExpertNovember 2020 - January 2021 (3 months)Paris, FranceResource identification and collaborationsScientific valorisation and validationImplementation of bio-analytical tools and statistical methodsInitial quality and sanity check of the data analysisProvided expert guidance in molecular and genomic analyses - Ipsen Pharma - IPSENGenomics and Computational Biology ExpertBIOTECHJanuary 2021 - March 2021 (2 months)Paris, FranceScientific valorisation and validationImplementation of bio-analytical toolsProvided expert guidance in molecular and genomic analyses
- Institut Pasteur ParisCharge de rechercheRESEARCHSeptember 2015 - September 2019 (4 years)Paris, FrancePerceptual learning- Performed multiphoton neuronal imaging, conceptualized biophysicalunderstanding of perceptual learning and memory- Analysis: PCA, clustering, correlation, regression- Fostered international collaborations (Chicago, USA)- Mentored 5 trainees (level Master 1-2 equivalent)Discovery and characterization of brain circuits- Functional understanding of circuits using imaging approaches- Time series analysis, motion correction, patterns- Worked with a team of around 5 co-researchersDesign of diagnostic model of human bipolar disorder- Diagnosis of bipolar disorder using Machine Learning and Logistic regression- Collaboration with clinicians- psychiatrists
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Education
- DoctoratSorbonne Université2019Systems neuroscience focussed on learning and memory of sensory stimulus
- Masters of ScienceHomi Bhabha National Institute, Mumbai2014Specialized projects in neuroendocrinology, circadian biology
Certifications
- Data science: Foundations using RJohn Hopkins University2020
- SQL for Data ScienceUC Davis2020