Freelancer profile translated to English.
Back to original languageAbout Simon
Hello, I am a PhD student in bioinformatics working on the characterization of human cell types. I perform transcriptomic analyses mainly (scRNAseq and RNAseq).
Outside of my professional activity, I create small games using Godot 4 (2D) I am still a beginner and I created a board game rental website, where the entire back-end is done in Django and the front-end is under development (CSS + React).
French
Native or bilingual
Remote only
Primarily works remotely
Experience
- CRTI UMR 1064 NantesPhD student in Bioinformatics : "Transcriptomic modeling of human peri-implantation development"October 2021 - Today (4 years and 8 months)Nantes, FranceTranscriptomic modeling of human peri-implantation development :- FASTQ alignement with Kallisto.- Quality Control.- Batch-effect correction using Mutual Nearest Neighbors.- UMAP visualisations.- Leiden clustering on cells.- Pseudotime with Monocle3 and Slingshot.- Plot heatmap using ComplexHeatmap R package.- Seek markers of clusters with WGCNA, SCENIC and TradeSeq.- Modules preservation with WGCNA and GWENA.- Web application to show previous results interactively using DASH.
- CHU de Nantes : Centre de Recherche en Transplantation et Immunologie (CRTI)Bioinformatic internship Master 2March 2021 - October 2021 (7 months)Nantes, FranceTranscriptomic modeling of human peri-implantation development :- FASTQ alignement with Kallisto.- Quality Control.- Batch-effect correction using Mutual Nearest Neighbors.- UMAP visualisations.- Leiden clustering on cells.- Pseudotime with Monocle3.- Plot heatmap using ComplexHeatmap R package.- Seek markers of clusters with WGCNA.
- Københavns Universitet - University of CopenhagenAlzheimer's MRI image biohackathonNovember 2020 - November 2020Participation to Alzheimer's MRI image" biohackathon by creating Convolutional Neural Network to classify MRI with or without Alzheimer from synthetic or real data.
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Education
- Master's degree, Bioinformatics and BiostatisticUniversity of Nantes2021Master's degree, Bioinformatics and Biostatistic
- Master's degree, Integrative biology and global changeUniversity of Orléans2019Master's degree, Integrative biology and global change