Freelancer profile translated to English.
Back to original languageAbout Mariano
Doctor of Biological Sciences with over 8 years of experience in bioinformatics, specializing in omics data analysis, microbial genomics, and the development of reproducible pipelines.
I support biotech companies, laboratories, and R&D projects in the analysis and interpretation of sequencing data, as well as in the automation of bioinformatics workflows.
Main Skills
Genomic, transcriptomic, and metagenomic analysis
Genome assembly and annotation
Long reads data analysis (Nanopore/PacBio)
Comparative genomics and phylogenomics
Reproducible pipeline development
RNA-seq data analysis
Automated visualization and reporting (R, Quarto, Shiny)
Custom bioinformatics tool development
Linux, Docker, and HPC environments
Technologies
R • Bash • Linux • Docker • Git • Nextflow • Quarto • NGS • ONT
I can undertake both one-off assignments and long-term collaborations, from exploratory analysis to the production of bioinformatics pipelines.
Spanish
Native or bilingual
English
Fluent
French
Conversational
Can work on-site
Toulouse (up to 50km)
Experience
- TAXON Bioinformatic Solutions.Co-founderJanuary 2022 - Today (4 years and 7 months)● Design and development of omics analysis pipelines (RNA-seq, metagenomics, genomic annotation) in R, Bash, and Nextflow● Integration and analysis of multi-omics datasets● Development of reproducible visualization and reporting tools (R/Shiny, Quarto)● Data structuring and implementation of reproducible workflows following FAIR principles● Collaboration with academic and industrial partners for biological interpretation of results
- CONICET / CEFOBIBioinformatician EngineerBIOTECHJanuary 2019 - January 2024 (5 years)Argentina● Omics data analysis (RNA-seq, metagenomics): quality control, processing, and interpretation● Statistical analyses under R: normalization, statistical tests, differential analyses (DESeq2, EdgeR)● Integration of multi-omics data from different projects● Development of reproducible and automated pipelines● Management and structuring of complex data (metadata, versioning, traceability)● Close collaboration with experimental teams (molecular biology, microbiology)
- Université Nationale de RosarioTeaching Assistant – BioinformaticsEDUCATION AND E-LEARNINGJanuary 2019 - January 2024 (5 years)Rosario, Argentina● Teaching R programming and omics data analysis● Training undergraduate and graduate studentsSupervising students:● Undergraduate/graduate students in biotechnology
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Education
- Doctor of Biological SciencesNational University of Rosario2024Analyses comparatives et phylogénomiques pour l’étude de la diversité fonctionnelle Développement d’approches bioinformatiques pour l’analyse de génomes et de données omiques
- Master in BiotechnologyNational University of Rosario (UNR)2016