Freelancer profile translated to English.
Back to original languageAbout Julie
You have complex data, I help you extract actionable results.
With 15 years of experience in data science and engineering applied to life sciences, I can help you with:
✅ Advise and/or train your teams
✅ Perform your data analyses
✅ Automate your processes → Save time and secure your analyses
✅ Transform your data into R&D decisions or publications
Techniques & tools: Python | R | Bash | Workflow manager | HPC | Linux | Cloud AWS / Azure
Recent achievements:
- Metagenomics of extreme soils → Scientific Reports 2025 [nature.com/articles/s41598-025-94915-0]
- Automated NGS analysis pipelines for Oncology projects → Nature Comm. 2021, Nature Comm. 2022, BioRxiv 2024
- Transcriptomics and post-harvest conservation → Postharvest Biology and Technology 2019, Acta Horticulturae 2023
Open-source workflows:
- RIBOSMK | Ribosome profiling [gitlab.com/RipollJ/ribosome_profiling]
- ALTSPLICE | Alternative splicing [gitlab.com/RipollJ/altsplice]
- TRAIN | Translatome regulations [github.com/Translatome/TRAIN]
Added value:
- Scientific expertise + ability to explain complex topics
- Project management, interdisciplinary communication
- Experience in training, supervision, conference organization
- Adaptability → biotech, health, environment, AI projects
My goal: Save your teams time, make your analyses reliable, and accelerate your projects.
Contact me if you are looking for agile, reliable, and efficient support!
French
Native or bilingual
English
Fluent
Can work on-site
Montpellier (up to 50km)
Experience
- DatavivoExpert Data Scientist & EngineeringJuly 2025 - Today (1 year and 1 month)Montpellier, FranceServices offered:
- Data analyses with detailed reports
- Bioinformatics analyses with detailed reports
- Development of automated and reproducible data analysis pipelines (Snakemake / Nextflow / MLflow / QIIME2 / Shell)
- Code optimization for scalability
- Scientific advice & Assistance with article writing
- ITKData ScientistAGRICULTURESeptember 2025 - January 2026 (4 months)Montpellier, FranceContextYield prediction for an American agricultural cooperativeImpact- +30% data- +5% performanceMissions- Data exploration- Climate and soil data analysis- Statistical analyses- Machine learning (RF, SVM, clustering)- Code optimization and maintenance for sustainable scalabilityTechs- Conda, Docker, CI/CD, Git, Pycharm- Python, Pandas, Scikit-learn, Numpy, Matplotlib, Seaborn, Scipy
- LIRMMComputer Science Researcher – Data Science & EngineeringPUBLIC SECTORJanuary 2019 - October 2023 (4 years and 9 months)Montpellier, FranceContextProject management and NGS Data Analysis for 8 R&D projects applied to oncologyRNA-seq, RIBO-seq, m6A-seq, altSplice, POL-seq, scRNA-seqImpactPublications of developed methods and obtained results in Nature CommunicationsMissions
- Big data management
- Work on computing cluster in HPC environment
- Development and execution of NGS analysis pipelines
- Improvement of existing Java tools for open access
- Time series data analysis
- Statistical analyses: Statistical learning, Machine Learning, Deep learning
- Development of new visualization methods
- Bayesian and Monte Carlo modeling
- Participation in team leadership
- Training of interns and an engineer
- Communications and technical document writing
- Organization of training sessions on workflow managers, good coding practices, and Python programming
Techs- HPC: Slurm, Qsub, Tmux
- Snakemake, Conda, Docker, CI/CD, Git
- Python, Pandas, Scikit-learn, Numpy, Matplotlib, Seaborn
- R, DESeq2, kissDE, ggplot2, Seurat, STARsolo, STAR, etc
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Education
- AWS Cloud Practitioner (CLF-C02)DataCamp2026
- Microsoft Azure Fundamentals (AZ-900)Data Camp2026