Freelancer profile translated to English.
Back to original languageAbout Emilie
With an initial degree and a PhD in agronomy, complemented by 7 years of experience in marine biology, I offer to perform the analysis of your biological and/or genomic data in one of these 2 fields. I can also assist you with the management of your scientific project, from the organization of the experimental part (in the laboratory, on an expedition) to the coordination of work with your partners.
Bioinformatics:
De novo assembly
Mapping
Functional and structural annotation
Genome comparison
Transcriptomic analysis and differential expression
Metagenome analysis
Phylogenetic analyses
Metagenetic/metabarcoding data analysis
Biostatistics:
Bio-curation (filtering of biological data)
Retrieval of complementary data available on scientific databases
Development of private databases
Statistical analysis of biological data
Medical statistical analyses (graduated from CESAM of Sorbonne University)
Whatever your project, whether it is well-defined or still a bit vague, let's meet so you can explain to me what questions you want to ask your dataset. I will then formulate a statement of work with a provisional schedule and a detailed quote.
At the end of the contract, in addition to the analysis results and possibly figures, I will provide you with a written report (in English or French) with a Material & Methods section to accompany your future publication.
Throughout France, I can travel to meet you for the project kickoff and I can also come in person for the project's final report. In the meantime, we will have regular exchanges on the progress of your project.
French
Native or bilingual
English
Fluent
Remote only
Primarily works remotely
Experience
- CNRSData analyst - BioinformaticianRESEARCHJune 2016 - June 2018 (2 years)Roscoff, FranceAs part of the ANR IMPEKAB project, I coordinated the implementation of a laboratory experiment on collodians, a group of symbiotic and colonial zooplankton. The aim was to test their response to thermal stress by studying both their physiology and gene expression.
- CNRSData analyst - BioinformaticianRESEARCHJune 2012 - May 2016 (4 years)Marseille, FranceAssociated scientist with the Tara Oceans expedition, my specialty was to integrate the different types of data collected (metagenomics, imaging, physico-chemical) to answer ecological questions. I worked on 4 major projects: 1. The turbulence of the Agulhas Current 2. Fertilization around the Marquesas Islands 3. Marine giant viruses (European project MicroB3) 4. A website compiling Tara Oceans data (Ocean Gene Atlas).
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Education
- PhD in Environmental SciencesUniversity of Bordeaux2011Au cours de ma thèse, j'ai poursuivi une expérimentation que j'avais mis précédemment en place au Congo (mesures de physiologie végétales, prélèvement, entretien du dispositif). La 1ère année j'ai surtout travaillé au laboratoire de biologie moléculaire (clonage-séquençage, RT-qPCR et design de librairies RNA-Seq). Les 2 années suivantes ont été consacrées à l'analyse de données moléculaires obtenues au laboratoire et les données phénotypiques obtenues au champ ou chez nos partenaires (metabolomique, protéomique). C'est à ce moment là que j'ai commencé à travailler sous R.
- Master's in Genetics and Biodiversity ManagementPierre and Marie Curie University2005